rs29082857 SNP Detail

Summary

• ID
  rs29082857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98382491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGATGG TCTGCTTTGA
  ACCTAGGCAG TCTGGCCGCA GAACCTGTAT TTGTAATCTC TATCACTGTA AGCTGGGTAA
  CACATCTTAA TTGACTACAT GCACTTGTCT GAGCCAGGTG ACATATTGAG AGCCGGCCAA
  CAGTGTCTGC ATCCTCAGGA CCAGCCTCTT CCCACACCAA CTTTTCTCTC AAAGCTTCAG
  Y
  ATCCTCTTCT GTAAAAGAAT TCATCTCAGC ACCCACGGTA GGGTGCCGAG GGTGCAGTGG
  ATTTGTGGGA GAGTGGAGGA GGTTTGGTCA CTGCAAAGAG CAAGACAAAT ATTAGTTTTC
  GCTGTATCAT CTATCAGCGA CAATAAATTT ACAGTGTGAA CAGAACTTCT GCGTAGTTTT
  TGGCTCCAGA ACCCAGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38411873	NES09668473	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29082857					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38411873	NES09668473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98382491 () rs orientation: forward

Symbol	Name	Function Class
Rr5084	regulatory region 5084	510 bp proximal
Rr6222	regulatory region 6222	1091 bp distal
Rr10213	regulatory region 10213	within coordinates