rs29082859 SNP Detail

Summary

• ID
  rs29082859
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98381180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTATGT CACACCCACT
  CCATCATCCT GGCGGGGGCA GCCTCTCCCA GCTGCAGCCA GCAGCCTCTG TGGGGGTTCC
  TGGTCCTCTC TGGACCAGGC CTGCATAACT GCCATGCCAT GAGACCCTGA AACCCTCGGA
  GATGATCCAT GCATGGGTTT AAGAAAAGCA GGGAGAGATA ACTGGGGCCC CAGATAACAG
  S
  CTTCCTTCCA GAAGAAGCTG GAAGTTCTAT CACGATATGT TGGAGATGTA TAAGAGACAG
  GGAAGACAGA ATAAGGGCTG GGGTCGAGCT TCAGCCAACC AGAAAAGGCC ACGATGACCC
  TAAATAAACT CCAAAGTGAA GCCCATAATG TGAAGTGACT TGTCCAATAC AGCTGGCAGC
  AAGTCCAAGA CCGAAACCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38411875	NES09668547	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29082859					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38411875	NES09668547	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98381180 () rs orientation: forward

Symbol	Name	Function Class
Rr5084	regulatory region 5084	1821 bp proximal
Rr6222	regulatory region 6222	within coordinates
Rr10213	regulatory region 10213	422 bp proximal