rs29084015 SNP Detail

Summary

• ID
  rs29084015
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98087205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAATGT CTCTTCCAAC
  ACTTGCTCAA GTTCAGCACT GAATTACCAC TCAGGAAACC GGGGTTCCGC CAGTCCTTAT
  GACCTCAGGC GGGTCATGCT TTCCTGAGTG ACAAGTGTTT TCAATGGCAT CTCAATTGGC
  AGCTAGATTT CTGTATCAGA AGGACCCCGG TTTCTTCAGC TCTGATACTG GCTAACTTGG
  W
  GCCTGGGCCC AGTCTTTTAA ACCAGTAAGT AAAGAAAGAT GGTCTCTGAG ACACTTGGGT
  GACTGGAGGT AGGCAGTCAG CGGCTCCTAT GATGGTTATG CAGCTAGATT AGCTGGAAAA
  CTACTGTGGG GTAGATGGCA AACTGAATGT GAGGAGGGGC AGGACTTTTT TTTCCCCAGA
  CACCAGGTTT CTCACTTTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38412607	NES09661237	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29084015					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38412607	NES09661237	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98087205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22849	CpG island 22849	465 bp distal
Rr692609	regulatory region 692609	1008 bp distal
Rr692610	regulatory region 692610	384 bp distal
Stard8	StAR related lipid transfer domain containing 8	within coordinates
Tssr161595	transcription start site region 161595	986 bp downstream
Tssr161596	transcription start site region 161596	938 bp downstream
Tssr161597	transcription start site region 161597	582 bp downstream
Tssr161598	transcription start site region 161598	404 bp upstream