rs29084018 SNP Detail

Summary

• ID
  rs29084018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98085830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACTTGG TTTCGGAACT
  CCTGGAAGCC TTCTCCTGCT AGAATTAACT TTGGTGCCCT AAGTTCCATG TGTTTCTATA
  TGGAAATAGA GTTTAGACTG CAGTGGACAG AGGTACTAGG GAGGTTGCAG AGTGCTGGTG
  CCTGATTAAC GTGGGAATGA CAACTTCCTG GAAATTTATG GAGTTCCTTC CGACTACTAA
  Y
  TATGTATCTC ACAGAAGCAG TCTCCTGGAC TTACTATAAA TTATCCTGGA CAAGTCACTT
  AAACCCTCTT GTGCACGTAG CATTTAGATT TGAAGCCTGC ATGCAGTGCC AGACACATTC
  AGAACTCAAT AAATACAGGT CAGCGTGGCC ATCTCACTGT TTCAAGCTCT GCTCTTTCAA
  AGCTCTGCCC TGGGCCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38412610	NES09661234	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29084018					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38412610	NES09661234	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98085830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22849	CpG island 22849	376 bp proximal
Rr692609	regulatory region 692609	36 bp proximal
Rr692610	regulatory region 692610	368 bp proximal
Stard8	StAR related lipid transfer domain containing 8	within coordinates
Tssr161595	transcription start site region 161595	380 bp upstream
Tssr161596	transcription start site region 161596	396 bp upstream
Tssr161597	transcription start site region 161597	765 bp upstream
Tssr161598	transcription start site region 161598	1779 bp upstream