rs29084019 SNP Detail

Summary

• ID
  rs29084019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98085644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCATTG TAAGCATAGT
  TGCAGTGCCT TGAGAACTTA CATACTCCTT CCTAGCCCTG GCTAAATACG AGTACTCAAT
  TCAACAATGA AATGAAGATT GTCAACTTAT GCTGAAAACT TCACAGGCAA GGTGAGGAAG
  AAACCAATTA ACACCATTTC TTACTGAATT TGAACAGACT TTCTGGGGGT ACTTGGTTTC
  R
  GAACTCCTGG AAGCCTTCTC CTGCTAGAAT TAACTTTGGT GCCCTAAGTT CCATGTGTTT
  CTATATGGAA ATAGAGTTTA GACTGCAGTG GACAGAGGTA CTAGGGAGGT TGCAGAGTGC
  TGGTGCCTGA TTAACGTGGG AATGACAACT TCCTGGAAAT TTATGGAGTT CCTTCCGACT
  ACTAACTATG TATCTCACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38412611	NES09661233	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29084019					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38412611	NES09661233	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98085644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22849	CpG island 22849	562 bp proximal
Rr692609	regulatory region 692609	222 bp proximal
Rr692610	regulatory region 692610	554 bp proximal
Stard8	StAR related lipid transfer domain containing 8	within coordinates
Tssr161595	transcription start site region 161595	566 bp upstream
Tssr161596	transcription start site region 161596	582 bp upstream
Tssr161597	transcription start site region 161597	951 bp upstream
Tssr161598	transcription start site region 161598	1965 bp upstream