rs29084020 SNP Detail

Summary

• ID
  rs29084020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98085400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG TATACAAGTC TTGGCCTGCC
  R
  TGGATTTGCT GAGTAGCCCA GAGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38412612	NES09661232	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A	A	G	A		A	A	A		G
ss325906466	CHEV_X_96237133	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29084020					SNP	G	A	A	G	A	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38412612	NES09661232	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98085400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22849	CpG island 22849	806 bp proximal
Rr692609	regulatory region 692609	466 bp proximal
Rr692610	regulatory region 692610	798 bp proximal
Stard8	StAR related lipid transfer domain containing 8	within coordinates
Tssr161595	transcription start site region 161595	810 bp upstream
Tssr161596	transcription start site region 161596	826 bp upstream
Tssr161597	transcription start site region 161597	1195 bp upstream