rs29084021 SNP Detail

Summary

• ID
  rs29084021
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:98085387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTTAGCAA TCCAATGAGA TGGATGTTGT CCCTGTAGTC
  TAAAGACCTT AGCTCCATGC CATTCATCTA CTAGGTATGG AGAAAATAAC CAGTATACAA
  S
  TCTTGGCCTG CCGTGGATTT GCTGAGTAGC CCAGAGTAAG ACGCCTCTCT TCACTTTCTG
  TCATTGTAAG CATAGTTGCA GTGCCTTGAG AACTTACATA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38412613	NES09661230	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29084021					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38412613	NES09661230	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98085387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22849	CpG island 22849	819 bp proximal
Rr692609	regulatory region 692609	479 bp proximal
Rr692610	regulatory region 692610	811 bp proximal
Stard8	StAR related lipid transfer domain containing 8	Intron
Tssr161595	transcription start site region 161595	823 bp upstream
Tssr161596	transcription start site region 161596	839 bp upstream
Tssr161597	transcription start site region 161597	1208 bp upstream