rs29084302 SNP Detail

Summary

• ID
  rs29084302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98178710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCTTTC CCACCTTTCT
  TACATGAGTG GCCAGTGGCC GGCTCTTGCT ACTGCCATGC CTACCTCTGA GCGCTTTGAG
  TGCCAGACTT GCTCAGCAGG CTCTAGGTGG GAGGCCTCCG CTTATCCCGG GAGCCCGCAA
  GTCTATAGAA GGCCAGCAGG GGGAGACATT AGCACGTGGG TACGTCCGCT GGGACCTGAG
  R
  AAAGCGAGTA GGTCAGACCG GGAGGGTCTG AGCTATGGGA TTGAGCCAAA TTATAAGCAA
  AGAGACAAGG AGGGGCGGAG AGAATGGGCC AGTGCTGGGA GACAAAGACC CAGATGGTGA
  GGCCGAGGCC GGGAAAGGCT GGAGTCCGGA ATCTCAGGGC CCAGATGCCT GCTTTTGCTC
  TTTCAAAAGG CTTCTCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38412324	NES09659305	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29084302					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38412324	NES09659305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98178710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22850	CpG island 22850	586 bp proximal
Efnb1	ephrin B1	1026 bp upstream
Rr406150	regulatory region 406150	741 bp upstream
Tssr161599	transcription start site region 161599	969 bp upstream
Tssr161600	transcription start site region 161600	986 bp upstream
Tssr161601	transcription start site region 161601	1015 bp upstream
Tssr161602	transcription start site region 161602	1076 bp upstream
Tssr163842	transcription start site region 163842	842 bp downstream