rs29084387 SNP Detail

Summary

• ID
  rs29084387
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:95153394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATGTTT CTGGGTCATA
  AAGGCAGCGT CTCCTTTTTT TCATGGCCCC CACATGGTAT CTACTAATTG AAGTGGTAAG
  TCAAAATGGC TTTTGGTAAG AGAGTGTAGG CAACAAGGTC AGTGAAGGAA AGTAATGTAC
  AATTAAACAG AAAGAGAATG GGGCTTTATT TTTGTATTTC CTCTTTTTTT GTAAAATGCC
  S
  CATGGCGTAT GAGGATGGTT AGCACACACA GAGAACAATC TTTCAAAAAC TTACTACTTT
  AACATATTAG TTCTTATTTA TATTTCTTGT TAGGTGTTAC ATTTGTACCT TAGTTTTTCT
  ATGGCACAGT GATTTGTACA TACCTACTTC CTTATACCCT AGCAAATCCA TTACTAAAAA
  AGATGACTGG ATAAATGTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38415509	NES09670962	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29084387					SNP	C	G	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38415509	NES09670962	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95153394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm30427	predicted gene, 30427			670 bp downstream
Msn	moesin			Intron
				Noncoding-Transcript-Variant
Rr692540	regulatory region 692540			1572 bp distal