rs29084391 SNP Detail

Summary

• ID
  rs29084391
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:95151817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTATCT TTTCTTTCCC
  ACTTGTCCCT GCATAGTTAC CTGTCTTTAG TTTTTTACCA AGCTCTCTGA CAGCTTAAGT
  GTTGTCTTGC TTGGCCTGAA AAGGCATAGG AGGTGGGGTA GGGCTAGTGC TCTCAGCATC
  TGAAAGTATT TTTTGGAGTA GGTAAAGCCT TCCAAGTAGA AAGGCCAAGT CTTGGCATGT
  S
  CTTGTTCTAT GCCTAGGTGT TACTAGGCTT TCTCAGATTA GGTTTGAAGA ACAGAGATTT
  TGATGCATAC AGCTTCAGGC ACTTGTCTCA TTCATTATTT TTTTTCCTGC TTTAAAATTT
  TTGTTTTCAG ATTTATTTAT TTTATTTTAT GTGTTTTGCC CGCCTGTATG TCTGGGCAAC
  GCTTGTATGC CTGGTGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38415513	NES09670972	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29084391					SNP	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38415513	NES09670972	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95151817 () rs orientation: forward

Symbol	Name	Function Class
Gm30427	predicted gene, 30427	within coordinates
Msn	moesin	within coordinates
Rr692539	regulatory region 692539	527 bp distal
Rr692540	regulatory region 692540	within coordinates
Tssr161511	transcription start site region 161511	1160 bp downstream