rs29084742 SNP Detail

Summary

• ID
  rs29084742
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98501970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGGCCT TAAGGCAGTA
  CCAGAAGACA GGCCAGATTC TCTTGGTCAG GAGCAAGCTG AAACCTGGGC TGGTGGCCAA
  GGGGACTCAA ACCCCCGAGA CTGCTTGAGA GCGGAGACTA AGTCACTTCA GGATTCCTCG
  GAGCCTCAAA GGGGAAGTCC TCAATAAATA CAGGAAGGAA GCAGCCTTAT GGAAGGTCTT
  M
  TATGGCTGTC GGTGCTCCAG GTTCCCAAGC CCTCCTCCCA GACATTCCAG ATATCATTGT
  GCCTCTTTTC CTGATGAGGG AGTTGAGGCT CAGCATATAG ATCGAAGCAT GCACATAGCT
  GGGAGGGAAA ACAAACAAAC AAACTCAAAC CAAAAACAAA CAAACAAACA AACAGACAAA
  CATCTCCCAT CTGGGCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38411734	NES09670569	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29084742					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38411734	NES09670569	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98501970 () rs orientation: forward

Symbol	Name	Function Class
Gm14808	predicted gene 14808	637 bp upstream
Gm30798	predicted gene, 30798	634 bp downstream
Rr8877	regulatory region 8877	1569 bp distal
Rr8878	regulatory region 8878	430 bp proximal
Tssr5651	transcription start site region 5651	687 bp upstream