rs29084865 SNP Detail

Summary

• ID
  rs29084865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98177665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCAGAA TTAGATGTTG
  GCACTCAGAA AATACCTCTG TCTTCCTGTT TCCCAAGTCT GGTAGCTCCC ATTTAGTGTC
  CTCTGGAGGG GCACAAGGCA TGTTGGCCAT GAAAAGGAAA ACTCTGGGGC CAACCTGGGA
  TAGTGACCCT GTCTGAGAAG CACTTTGCTC TATGGCCAAA ATTAATGACC CTTCCTAGGA
  Y
  TAGTGACCTT CTGAGACCTG CGAATGAGGA GCAGTGATCT GGCCATCCTG GGGGCTGTGG
  TTTTCCAGGA ACCTCGAAGC TTGTAATTTA CAATAAGCCA AGAGAGTGAG TATGCATGGA
  GCATCTGCAA GTGGGTCCAT CTGTATAGTA CAAGGAATGG CTGTAAAATT GGGGACAGAG
  ACACCAGGAA CGACCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38412327	NES09659327	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29084865					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38412327	NES09659327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98177665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22850	CpG island 22850	1631 bp proximal
Rr406150	regulatory region 406150	1786 bp upstream
Tssr163842	transcription start site region 163842	1887 bp downstream