rs29085595 SNP Detail

Summary

• ID
  rs29085595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:95202702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGAGAT GGTTTAGAAT
  CCTGTGGTGG ACCTGTTGAT GAGAATATCA ATTATCTTAT AGAAGAGGCC CTTTGAGATT
  CAGTAGTTAG ATCTCTAGGT AGAGAGATAT GACATTGTAT GTTCCCATAA GAGTTAATCC
  AGTTGGGTCA GTCAGTCACC TGGCTAAGGG AGCGCTGGTC AGAAACGTGT AAGTTCCTTA
  S
  CGCTGCCTTC TGAGAATAAG TAAGTAGGAG AAATAAGTAT CTCTCTAATG AGGTGGTGTA
  CTTTTTCTTC CCAAAGTTTC TCCTCCATAG TTTAGGCCCT ATGAGCTGCC ATGGGGTTCT
  GTTGGATCTG CTCATCTTAT TGTATCCTGA CATAGGAAAA CAACCTTTCC TTTCCTTCTC
  TTCTGCAGTT TTGTTGTGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38415428	NES09670964	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29085595					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38415428	NES09670964	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95202702 () rs orientation: forward

Symbol	Name	Function Class
Msn	moesin	Intron
Rr692548	regulatory region 692548	814 bp distal
Tssr161521	transcription start site region 161521	987 bp upstream
Tssr161522	transcription start site region 161522	1045 bp upstream