rs29085596 SNP Detail

Summary

• ID
  rs29085596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:95202473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGACAAT AATAATTAAA
  GAAGAGATAA TGAATTTTGG GGAAAACACA AGGAAGTTGG AGTGATGTAT TAGTGTTCAC
  GTAGTAGTTC TGAATAAAAT AAATAAAAGG CCAGCAGAAA TGAAAGGCTT TTAAACAAAT
  AATAATCAAG ATAATTGAAG TTTAAGAAAT TTAGATATTT GTGTACTTAA TAGCCTGTTT
  Y
  CCCATAACTA GAGCTCACTT AGCAGAGATT ACAGAGATGG TTTAGAATCC TGTGGTGGAC
  CTGTTGATGA GAATATCAAT TATCTTATAG AAGAGGCCCT TTGAGATTCA GTAGTTAGAT
  CTCTAGGTAG AGAGATATGA CATTGTATGT TCCCATAAGA GTTAATCCAG TTGGGTCAGT
  CAGTCACCTG GCTAAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38415429	NES09670963	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29085596					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38415429	NES09670963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95202473 () rs orientation: forward

Symbol	Name	Function Class
Msn	moesin	Intron
Rr692548	regulatory region 692548	585 bp distal
Tssr161521	transcription start site region 161521	1216 bp upstream
Tssr161522	transcription start site region 161522	1274 bp upstream