rs29086045 SNP Detail

Summary

• ID
  rs29086045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:94673931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTCTCC GGGGATTTCC
  CCTCCCACAG CACTCCCAAC CCTTTCTTGG CCTGGCATTT ACTCCCTTCT CAACCCGTAG
  CCCTTCTCCT ATAGTCCCCT TCACATATTC CAGCTTTTCG AAGACTCATA TGCCCTTGTC
  ACCTTACTCT GTTGAACTTC CAGGTGCCTA CCACGAAGAG CAAGAAAACC CTGCGAAGGA
  Y
  GCTGAAAAGA AAGACATCTG CAAACAATAC ACCTAAAAAG GGCATTTTGA TGCGTGTTTG
  AGAATGCCGG TAGATTCAGC ATGCCACCTA AAGGAGGTGT GGCATCTGAG CAATGGCCAA
  ATGTGTAGAT ACTGTATAGT TACTACACAG TGCTTTGATG CTGGTGAAAT TAAGTCAATC
  TGATATGAAA CTATGTGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38415837	NES09663811	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29086045					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38415837	NES09663811	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:94673931 () rs orientation: forward

Symbol	Name	Function Class
Gm9043	predicted gene 9043	within coordinates
Gm62132	predicted gene, 62132	within coordinates