rs29086214 SNP Detail

Summary

• ID
  rs29086214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:95921686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATTTATT TTAAAATAAA
  AAATAAATTT ATGCTGTGTT TACATAGTTT CCACCACTCT CTTTCTGCAA CTTTCCCTTA
  TCTCTTCCAC TACAGTTTCC CACATATCTT CATCTACATT TCATTACCTC TTTTATCTCT
  TCTTCAACTA GTGTGTGTGT GTTTGTATAT GTGTGTGCTC AAGCAGATAC AACACATTCT
  Y
  CTATGCATAT GCATACCAAA GCCCACTATG TTGAAGTCTC TGTTTTGTTC TGCCACCTGA
  AGTCATGTTG ATATGAGTGG CCTGCACTAC CATCTCAGGC CATGTTCATG TTCTTGACCT
  CTGCTGAAGC AGAAGGCCAT GTTGATGTCT GTGGTGTGTA CTGCCACAGG AGACCAGGCT
  GAGCTCCACA GAATACGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38414946	NES09663946	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29086214					SNP	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38414946	NES09663946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95921686 () rs orientation: forward

Symbol	Name	Function Class
Rr5036	regulatory region 5036	1486 bp distal
Rr5037	regulatory region 5037	715 bp proximal
Rr8052	regulatory region 8052	664 bp proximal