rs29087574 SNP Detail

Summary

• ID
  rs29087574
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:95288198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTATGT GAATGTTCAG
  ATAAGTAATC TGTAAACATT TTCACATGCA AGAATAGGAG ACATTCCTGG TGGTTCCAGT
  GTTGGGGGTT CCCTGAATTT GTGGCTCACT TTACTAGGGC AATTTCAATA AACATTCTCT
  CTTCAAGCCC AGGGATTAAT TCTAAAGAGC AGAATGAGAT AAAGGGTGTT TTCAAGGCTT
  K
  CAGGGCTGGA CTCACAGATG TTTCATGAAG GAAGCTGAGG TTTCTACTGG GTGGTACCCA
  GGTTGTGGAG GCTGGTAAGT GAGATGGAGA AGAAGAAGTC ATCTCTGACA CTAATTATGC
  ATAGCTAGCA TTTGTCAAAG AAGAAAATGC TGAGATTTTG GTCATAGACT TGGCAGCATC
  AGTGGGGGTA AAATAGGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38415376	NES09669821	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29087574					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38415376	NES09669821	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95288198 () rs orientation: forward

Symbol	Name	Function Class
Mir223	microRNA 223	1666 bp downstream
Mir223hg	Mir223 host gene	950 bp downstream
Tssr161563	transcription start site region 161563	1681 bp downstream