rs29087577 SNP Detail

Summary

• ID
  rs29087577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:95286243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATTCAA ATCCAGTTTT
  AAAAATCAAC ATCTAGGTAC ATAACCAGGG TAAACAGAGC ATACAAGAAG TTGATAGGAG
  GAAGGAACAC ATAAATTGTC CCCGAGGACA GAATGATGAC AATTTTTTCC TGTTTCAGCT
  GAATAGAAGA GTTAATTGAG GCTTGGGCCA CCAGAATCTC CAGACAAACA CCCAGGATCC
  Y
  CGTTTTTGTT TGGAGCATTA GCGTGTTTTG TTCACTTCCC TCTTTTGGTG TGTCTTAGTC
  AGTCATGTTA GTGTCTGCCA TTTGTCTCAC ACTTAGGGTA AGATATAATC ACCCTATTTT
  TTTCTCTTTC CAGTTGCACA TCTTCCAGCA TGTTCTTGCT GCCCAGTGGA GGTTCCTGAT
  CTGGCCATCT GCAGTGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38415379	NES09669838	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29087577					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38415379	NES09669838	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95286243 () rs orientation: forward

Symbol	Name	Function Class
Mir223	microRNA 223	180 bp upstream
Mir223hg	Mir223 host gene	within coordinates
Tssr161563	transcription start site region 161563	269 bp upstream