rs29088280 SNP Detail

Summary

• ID
  rs29088280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98087750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGCAGT TCTAGCGCCC
  ACGCCCACTC GGAGGGTTTC AGTCCCTGCC TGTGCCATCA GTATTCTTGC TGTCTGGGTT
  TCCTCTAGCC TTCCCTTCTT GGAATGAAAG GGAGACATTT CTTTCTTGGG GGACTGGAGG
  TGAGCAGCCC AAGGCACAAG TGGTGTCTAG GTGAGTGGTC GAGTGGGAGA GGTGGAGATA
  R
  AGTTTTTATC CTGAAGTTGT AGCTGCCATT TCGCTGGGTA GCTGGTGTTG GTCCTTACTT
  CAGAGTGTTG GTCTTTCTTT TCGCCCAGGT TCCCGACTTG GAATTTCTGT TCCTTGAACC
  TCTATAGTTA TTGCTGAGAG ATGCCATACT GAACAGAGGC TGTTTGCCCC TGGTCGCTTA
  CCCTCATTCC ACAGTGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38412603	NES09661241	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29088280					SNP	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38412603	NES09661241	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98087750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22849	CpG island 22849	1010 bp distal
Rr395411	regulatory region 395411	1758 bp upstream
Rr692609	regulatory region 692609	1553 bp distal
Rr692610	regulatory region 692610	929 bp distal
Stard8	StAR related lipid transfer domain containing 8	within coordinates
Tssr161595	transcription start site region 161595	1531 bp downstream
Tssr161596	transcription start site region 161596	1483 bp downstream
Tssr161597	transcription start site region 161597	1127 bp downstream
Tssr161598	transcription start site region 161598	128 bp downstream