About   Help   FAQ
rs29088282 SNP Detail
Summary
  • ID
    rs29088282
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    ChrX:98087294 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGGAG GTAGGCAGTC AGCGGCTCCT
    R
    TGATGGTTAT GCAGCTAGAT TAGCT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss38412605 NES09661239 PERLEGEN MM_PANEL2 f SNP A G G A G A A G G G A
ss46498558 mCV22561908 ABI CRAMUS_MOUSE f SNP G G A A
ss134253138 ENSMUSSNP6328971 ENSEMBL ENSEMBL_Sanger f SNP G G A
ss325906468 CHEV_X_96239027 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs29088282 SNP A G G G A G A A A G G G G A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38412605 NES09661239 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:98087294 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi22849 CpG island 22849 554 bp distal
Rr692609 regulatory region 692609 1097 bp distal
Rr692610 regulatory region 692610 473 bp distal
Stard8 StAR related lipid transfer domain containing 8 within coordinates
Tssr161595 transcription start site region 161595 1075 bp downstream
Tssr161596 transcription start site region 161596 1027 bp downstream
Tssr161597 transcription start site region 161597 671 bp downstream
Tssr161598 transcription start site region 161598 315 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory