rs29089101 SNP Detail

Summary

• ID
  rs29089101
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:108241276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAACCCA GCTCAATATA
  ATGTTAAACA TCTCTCTGAT TTTGCAGTTT TTAAACATTT GCATGGATGC TATGCAATAT
  TCTCACAATA GTTCAATGAA AATGGAAGGG GTATTATTAT AATTTAACTG TTGAGAAAAT
  TGAGAGCCAG AAATAAGTAA ATTCTTCAGG GTTAAACAGT GATAAAAAGG AATCAAAGAA
  W
  TTCTAGTTTT ATCCTTTGCC TCTTAAGCAA CAGTTCTTCC CTAGAACATG GTTCATGTCA
  GAGAAAAAAA TATTACATTG CTTAATTAGT TATTTTATAT TTTAGGAGTA CAGTTCACTC
  ATATTTTATA ACTTGTCTAA GAAAATGCTT GGAGAAGCCT TCCTAACTAA ATTCCTCTAC
  AAAGAACAGA GACATGCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38418213	NES09808077	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29089101					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38418213	NES09808077	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:108241276 () rs orientation: forward

Symbol	Name	Function Class
Gm6377	predicted gene 6377	within coordinates
Rr10304	regulatory region 10304	781 bp distal
Tssr161871	transcription start site region 161871	907 bp downstream
Tssr161872	transcription start site region 161872	876 bp downstream
Tssr161873	transcription start site region 161873	852 bp downstream
Tssr161874	transcription start site region 161874	841 bp downstream
Tssr161875	transcription start site region 161875	1898 bp upstream
Tssr161876	transcription start site region 161876	1970 bp upstream