rs29089103 SNP Detail

Summary

• ID
  rs29089103
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:108240882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCAGGT TTTGCCAGTT
  AGCCCAGGCT GACCTTGAAT TTAAGATACT TTTGCCTCAG CCTGCTGAGT TCTGGGATTG
  CAGGTGTGAA GCATTATGCC TGACTTTTTA CATAGATTTT ACAGTGAAAT TAGAAACTCT
  TAGGCTTGTA TTAATAAATG ATGTAAAAGC ATGAAATAGC AAATAAGGAA GGGAGCTTTG
  W
  GTCCAAAAGA AGAAAAAGGA AAAAATTAAA AATAATGGAG AAGGAAAAAG CAGAGACCTA
  CATTATAGGA AAAATATAGA TAGCTATGAT TATAGTTTAG TTCAGAAATT TTCCATAGGT
  ATAAGTTTTA TTTTAAGTGC CCTTTTAGAC AGTAAAAGGC AAGGCATTTT TATTAATTTC
  TAAATAAATA CTAAAAAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38418215	NES09808111	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29089103					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38418215	NES09808111	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:108240882 () rs orientation: forward

Symbol	Name	Function Class
Gm6377	predicted gene 6377	within coordinates
Rr10304	regulatory region 10304	387 bp distal
Tssr161871	transcription start site region 161871	513 bp downstream
Tssr161872	transcription start site region 161872	482 bp downstream
Tssr161873	transcription start site region 161873	458 bp downstream
Tssr161874	transcription start site region 161874	447 bp downstream