rs29089446 SNP Detail

Summary

• ID
  rs29089446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:108239241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGAAAT TGAACAATCC
  TAACTTCTTT CTGTGTCTGG TTTTTCTCAT AAGGAAAAAC AGTATCTCTT TCTTGGAATT
  TTAGGAAGAT CAAATTGCTC TGTGTGAGAT ATTCTGAATA GTGTTTGACA CATGTAATAC
  ACTATACATA ATTGATGGTG GAATCAAACT GTGTATATTC TCTTACAGAA TACATACTTT
  R
  CACATATACA TAACATACGT TGCAGTGCCT AAGGACATGG ACTCTTAGTC CAACTGTCTG
  CTCAAACATC TACTTCTATT AGTTACTAGT ATTGTGACTG TAAAAAACAT ACATTCCTTT
  TCTTTTCCTT TGTTTTCTCT GTAAAATGAA TAATCGTGTG TTTCTTAAAT AATCTACATG
  ACAATTTATA ATGCTTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38418218	NES09808162	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29089446					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38418218	NES09808162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:108239241 () rs orientation: forward

Symbol	Name	Function Class
Gm6377	predicted gene 6377	1121 bp upstream
Rr10304	regulatory region 10304	834 bp proximal
Tssr161871	transcription start site region 161871	1115 bp upstream
Tssr161872	transcription start site region 161872	1137 bp upstream
Tssr161873	transcription start site region 161873	1167 bp upstream
Tssr161874	transcription start site region 161874	1187 bp upstream