rs29089447 SNP Detail

Summary

• ID
  rs29089447
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:108239080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAAGTG CTGAGATTAA
  AGGCGTGTGC CACCACGCCC GGCGAGAATT ATTTTAACTG CCTAGAAGGA GTCCTTCATT
  TTGTCCCGAG CTTGGGGAGC TATCTGGACA TGATGGCTTG TCATACCTTA ATAGTAGTGA
  TTTCCAACAT CTCCTTACAC TTCTCTGAAA TTGAACAATC CTAACTTCTT TCTGTGTCTG
  K
  TTTTTCTCAT AAGGAAAAAC AGTATCTCTT TCTTGGAATT TTAGGAAGAT CAAATTGCTC
  TGTGTGAGAT ATTCTGAATA GTGTTTGACA CATGTAATAC ACTATACATA ATTGATGGTG
  GAATCAAACT GTGTATATTC TCTTACAGAA TACATACTTT ACACATATAC ATAACATACG
  TTGCAGTGCC TAAGGACATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38418219	NES09808161	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29089447					SNP	G	T	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38418219	NES09808161	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:108239080 () rs orientation: forward

Symbol	Name	Function Class
Gm6377	predicted gene 6377	1282 bp upstream
Rr10304	regulatory region 10304	995 bp proximal
Tssr161871	transcription start site region 161871	1276 bp upstream
Tssr161872	transcription start site region 161872	1298 bp upstream
Tssr161873	transcription start site region 161873	1328 bp upstream
Tssr161874	transcription start site region 161874	1348 bp upstream