rs29090754 SNP Detail

Summary

• ID
  rs29090754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:109455878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTGCAT TTTTTTATTC
  ATGATCTGTG TCAGTTTAAC TTCTTGGAGT AGATCTAGCA TAGTAAAATA ATAACTTTTG
  TATTTTGTGT GTCATAAGTT ATGTAAAACC AATAATACAC TGCACTGAGA ACACATTCTG
  TGTGGAGTTG AATGACTGAG AAAACCTGCC ACAGAAAAAT TAAATATAGC CTATGAATTC
  Y
  TGCTCATTGA CATCCACAAT TACATAATAG CTTTATGGAA CATATTTAAA GGAAATAAAC
  TATTTATAAA ATGAATGATC AGGACTTAAA AATACTTGCT AAAATAATAA TCCCAATTAA
  TCAGGAAATG GTATTTCCAG TACTGTGACA CTTCCCCCTC CCCTCATCCC GCCACACAGA
  TAGTTTGTCT TTTTGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38417146	NES09811691	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29090754					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38417146	NES09811691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:109455878 () rs orientation: forward

Symbol	Name	Function Class
Rr6414	regulatory region 6414	956 bp distal