rs29094496 SNP Detail

Summary

• ID
  rs29094496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105251996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTATCAAA AGAAAGTCCT
  GTTAAATGTA AATGAGACCA GGAGCTGAAG TCCAAGCGCT GCTGCTAGTG ACACATATCG
  GAAAACTGCT TCTAAAAACA GAGTTGCCAT GGTGAGACTC AACATTAATG AAGCTGTCTA
  GAAGCAAGTA CTTGTACTGT AACAAAACCT TCCAGATGTA ACTAATGTGA AAAATATTAC
  Y
  ACTACGTTTC TAAGATAAAA CTTATGAAGA CTTAGGCTAT TGAGTCCGCC ATATGGGCCC
  AAACACACAA AAATGTTAAT GTATGCAGAA CAGACTTTAT TCCTTACATG GTGTCATTGT
  CATCGTCGTC ATCATGCTTC CTCTTCAGTG GGTTTGAGTC GGTGGCTGTG TTCTGTGAGG
  AAACCATGCT GGTGGTAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss38423408	NES09801624	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs29094496					SNP	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423408	NES09801624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105251996 () rs orientation: forward

Symbol	Name	Function Class
Taf9b	TATA-box binding protein associated factor 9B	within coordinates
Tssr164020	transcription start site region 164020	281 bp upstream