rs29094500 SNP Detail

Summary

• ID
  rs29094500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105251516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTCTG AGTCCAGTGT
  AAATTACTTT CCAAGGCAGG TTTTAAGTTA TATTTTAAAT TTTAAACATG AAAGATTGTG
  AATGCAATTG ATGCAAAAGT GCCTATCAAT GAGAAGTGCT TAGCAGGCAT GAAAGGCAAG
  TGCTGAGACC CGAATGCTCT GTTAGGAGTG AAGAAGAGCA AAAGCAGACA CTCCGGTTCA
  Y
  AGGAACTGCA GAGTGCCAGG CATCTAGGGC ATATTACACA TTCCAGTCAC AGTCTATTAC
  ATTTAAGTGC AATGGCAAAT GACTTAAGGC GATGAGAGGT GGGAACAGAA AACAAACGAG
  ATCTAGATAG GAAATCAGAA AAGACCAAAA CCCAAATACA TTCAAAATGG ATTTAGCACA
  CTTCTAAATC CACTCTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38423412	NES09801620	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29094500					SNP	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423412	NES09801620	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105251516 () rs orientation: forward

Symbol	Name	Function Class
Taf9b	TATA-box binding protein associated factor 9B	within coordinates
Tssr164020	transcription start site region 164020	177 bp downstream