rs29094503 SNP Detail

Summary

• ID
  rs29094503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105251326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCTGT TGGCCTGATA
  GGGAAAGAGA ATCAGAATCT TCCTTCAGGC TTGATCCCAT CTTATGTGTG ACACCCTCAG
  CAGCAAGCTA GAAAGGTGGT CTGAATGAAA CCAACGGACT GGTTCAAGCC GTAGTGACCA
  AAGCATATAT ATATGCAGGT GGTTAAGAAA AACAACAAAG TTCTTTAGTG GTTTTGTCTG
  R
  GTCCAGTGTA AATTACTTTC CAAGGCAGGT TTTAAGTTAT ATTTTAAATT TTAAACATGA
  AAGATTGTGA ATGCAATTGA TGCAAAAGTG CCTATCAATG AGAAGTGCTT AGCAGGCATG
  AAAGGCAAGT GCTGAGACCC GAATGCTCTG TTAGGAGTGA AGAAGAGCAA AAGCAGACAC
  TCCGGTTCAC AGGAACTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38423415	NES09801617	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29094503					SNP	A	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423415	NES09801617	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105251326 () rs orientation: forward

Symbol	Name	Function Class
Taf9b	TATA-box binding protein associated factor 9B	within coordinates
Tssr164020	transcription start site region 164020	367 bp downstream