rs29094514 SNP Detail

Summary

• ID
  rs29094514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105645053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAAGTTT TACCTCCTTT
  CTGAAGCCAT CTCCACTACC TTTGGCCTCA TTAAATGATA AAAAAATGAC ACTAGTTTAA
  TTATCTCATC TTGCTACATT CTTTATGTTT ATAGTCACAG CAGCATTGTG ATTTCCCCTA
  AGAATGGGGA CTATGTCTTA ACCACTTTGG AGGTAAGACA TTTTTTGTAT TACGCTTAAA
  Y
  AATACTTTCT TTGCTAGATT ATAATAACTT TGAGATATTT TAATAGGAAC CCGAGAAAGA
  GTAAAATAGA CAAAATAGCT AGGGATGTAG CTCGGTGGTA GAGTGCTTGC TGAGAATGCT
  CAGAAGCCTG TGTTCAAACT TTTCACCTCC AAAATAAAAG TGGAAGCCCA GAGAGAAAGA
  GCTATACTAA TTGAGAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38422706	NES09812922	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29094514					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38422706	NES09812922	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105645053 () rs orientation: forward

Symbol	Name	Function Class
Cysltr1	cysteinyl leukotriene receptor 1	within coordinates
Gm5127	predicted gene 5127	within coordinates
Rr395484	regulatory region 395484	675 bp upstream