rs29094616 SNP Detail

Summary

• ID
  rs29094616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105427446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTAGGATTA GTGTCTGGAT TATTGTCAGC CATGTTTCTT
  GGAGCACTGT CAATAGTGCA ACTGTTTAAG ACAGTATTCA GAGAGTAAGT GTCTGAAGTA
  Y
  TGTTATCAGT GTTAGTATCT GGAGCAGTAT TCACAGTGTA AGGACAGAGA GTACCAGGAG
  GAGCAGATGT GTCAATGGCT TTGTTCAGAA GCAAAGTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38423118	NES09813674	PERLEGEN	MM_PANEL2	f	SNP		C	T	T		C	C	C	C	C	C	T
ss46503185	mCV24813454	ABI	CRAMUS_MOUSE	f	SNP	T				T		C
ss134261610	ENSMUSSNP614724	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29094616					SNP	T	C	T	T	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423118	NES09813674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105427446 () rs orientation: forward

Symbol	Name	Function Class
Gm6325	predicted gene 6325	within coordinates