rs29094617 SNP Detail

Summary

• ID
  rs29094617
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105427429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGATTG TAATTACTTA
  TGGAAGGGCC TATAATATTG TTATTGATGT CAGTGTAAAA GCCCACATTT GAGGTAGAAA
  TGCTTGGGGT ATGAGCAGAA GAACTAGTGA TTCTGTTAGT AGGATTAGTG TCTGGATTAT
  TGTCAGCCAT GTTTCTTGGA GCACTGTCAA TAGTGCAACT GTTTAAGACA GTATTCAGAG
  M
  GTAAGTGTCT GAAGTATTGT TATCAGTGTT AGTATCTGGA GCAGTATTCA CAGTGTAAGG
  ACAGAGAGTA CCAGGAGGAG CAGATGTGTC AATGGCTTTG TTCAGAAGCA AAGTTGTGTC
  ACTAAATGTA GAGGCAGTCT TGTGTTCACC AAATTGGTGA TCTCTTATTT TCTTCTTTGA
  ATATTCTCCA GTCTTTACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38423119	NES09813673	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29094617					SNP	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423119	NES09813673	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105427429 () rs orientation: forward

Symbol	Name	Function Class
Gm6325	predicted gene 6325	within coordinates