rs29094622 SNP Detail

Summary

• ID
  rs29094622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105427120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTAAAA TGCACTGTGA
  GTCCAAATTA TTTGGCTTGT ACCCTCATTG ACAACAGAAT GGGGTTCCTG TGTTTACCTT
  TCAGTGATGC ATTTGACGAC TGACTCTTCT TTTGGTTTTC ACCTAATATC TGCTTATTGT
  CTCTAGCTCC CATGTTAGCC TCTGTCTCTC CATGAACGTT TTCAGAAATG CTGGCAACAT
  Y
  AGAAGGTCTG AGGCCATCAT TAGTTGAGAA GAAAGTGTTG CAAGCATTCT CAGAAGTACA
  GCTTGGAATA CTCTTAGCAT CTGGTGGTTC GTGAGTTTCA TCATAGGTGA CTTGATTGTA
  ATTACTTATG GAAGGGCCTA TAATATTGTT ATTGATGTCA GTGTAAAAGC CCACATTTGA
  GGTAGAAATG CTTGGGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38423124	NES09813668	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	T	T	C	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29094622					SNP	C	C	T	C	T	T	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423124	NES09813668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105427120 () rs orientation: forward

Symbol	Name	Function Class
Gm6325	predicted gene 6325	within coordinates