rs29094716 SNP Detail

Summary

• ID
  rs29094716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105251066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACACCA CCCTATGCTG
  ATACTTAGTA AGTTTTGATG ATCCATGGCT ATAAATTTTA AGTGGCATGA AGGTTTCAGA
  AAGTTTTTCC AATGTTGGCT ATGTGGAACT TAAACCAAAT CAAATCAGTT CTTTTTATAC
  TTGGAAAAAA GCTTTGCTGT TGTTCCCAGT GAGTCTTGTA CGTATGTATT AACAGAGTAG
  R
  AGAAGGTGTA TAGAAACATG GTTGGGAAAT TTTGGGGTAC CTAAATGGAG TCAGGTGACT
  TTTCCCTGTT GGCCTGATAG GGAAAGAGAA TCAGAATCTT CCTTCAGGCT TGATCCCATC
  TTATGTGTGA CACCCTCAGC AGCAAGCTAG AAAGGTGGTC TGAATGAAAC CAACGGACTG
  GTTCAAGCCG TAGTGACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38423418	NES09801614	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29094716					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423418	NES09801614	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105251066 () rs orientation: forward

Symbol	Name	Function Class
Taf9b	TATA-box binding protein associated factor 9B	within coordinates
Tssr164020	transcription start site region 164020	627 bp downstream