rs29094723 SNP Detail

Summary

• ID
  rs29094723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105248763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCAAGGC TACCAAGTGA
  GACCTGTCTA AAAACAGAAA AATAAAACAG TAATTTTCCA AGTTTTTTTA TGCTATTGAT
  TAATTCCAAC ACCCACTAAA AGTATGACCA TTACAGTATA TGTGAACACA TCAGATAGTT
  TGTTTTTAAA GTGTAGAAAT CTGCTGGAAT CCTTGGTGCC TCTGTCCCAC TTCTTGGCTG
  Y
  CCTACATTGG ACAGGTGTTG CAGGGGTTTT CACCTTGGAA ACCCTTGATT CCATTTCCCC
  CTCTCTGTTT ACTCTGCCGG GAGTTACTGT GGAGCCCAGG CTGGCAAGGA TGGGCTTCCA
  GATTTCATTT TTTTTAATTG GATGTTTTAT TTACATATCA AATGTTATCA CCCTTTACCA
  AAATCCCTAT CCCATCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38423425	NES09801709	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29094723					SNP	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423425	NES09801709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105248763 () rs orientation: forward

Symbol	Name	Function Class
Pgk1	phosphoglycerate kinase 1	1458 bp downstream
Taf9b	TATA-box binding protein associated factor 9B	1726 bp downstream