rs29094796 SNP Detail

Summary

• ID
  rs29094796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105762898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTATGTGT GATGTTAGCT
  TTTTCATAGA TATTCTCCTT ATTATTATAA CTGGCTGATC TCTGAATTTC AAAACAATGG
  AAAGAGGAGT TTGGTCTAGA TATGACTTGC TAATACTTAC TTTTTAACTT ATCTCTTGCT
  TGGATCAGAG GAATTTAGGT TTTTCTAACA CCATCAGTCT TAACTTGGTG ATTGACTCTT
  Y
  AGATGCCTTA ACCAGATATG AAGCAGGATC TATTGATAGG CATTTTTATC TAGATGGACA
  CTTGTCAGCT TTCAATGCAT TATTCAGTGA ATCAGAGCAG TTTATTAATC TACATTTTTA
  ATTTAAAGGA TCTATCATAA AGATTAAAGA GCCAGGATCA AGTTCTTGAG CAAAAAATTA
  CTACAATTAT CTTTGTATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38422448	NES09812335	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29094796					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38422448	NES09812335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105762898 () rs orientation: forward

Symbol	Name	Function Class
Rr2553	regulatory region 2553	1698 bp distal