rs29094797 SNP Detail

Summary

• ID
  rs29094797
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105761546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGTCTTTT GGAAATTCCT CAAGTTTGTT CCCTTTTTTT
  ACTTCTTTGA ATGCAGTTCT TCATCCTTTA ATGTCTTTTC TCAAATAGAT CCCTTGATTT
  W
  TTTTTTCTGT GCACCTATGG GCTCATGACA ATGTTCTCTG ATTTTCTGAC AAATGTGGAA
  AAGACTCAAG CCTGATATAT AAGTGGATAT ACATGTTCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss38422449	NES09812348	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	A	A		T	T	A	A	T	A
ss46490882	mCV24603355	ABI	CRAMUS_MOUSE	f	SNP							A		T
ss134261993	ENSMUSSNP6486138	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs29094797					SNP	T	A	T	A	A	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38422449	NES09812348	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105761546 () rs orientation: forward

Symbol	Name	Function Class
Rr2553	regulatory region 2553	346 bp distal