rs29094799 SNP Detail

Summary

• ID
  rs29094799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105761315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATTTCAC TGCCTAAACA
  GATCCTCCTA CAGCCTGGAC TTTTCAGATT GTCAAAGTCT AGCCCTACAT CTCTCTGCAA
  CTGCCTTCCA GAAATCAAAA TCAAAATCCA CAACGACATT TGAAGCTTAG AGAGTTGTGA
  GTTTGTCTTT ATGGTGGGAC TCTATGTCTC TTTTCACAAC GTTTTGTTTA CCCCTGGAAA
  R
  GATAGGGCTT TTGCTTCTCC CCCCACCCCC CGCCCCCTTG CTAGGGAGCC ACACAACTAG
  AACTGGGTTC AGCTCTGTTT CTTCCTGGTG TGGCACTTGT CTTTTTCTCT ACAATTTCTT
  GCTGTTATAT TCTGTCTTTT GGAAATTCCT CAAGTTTGTT CCCTTTTTTT ACTTCTTTGA
  ATGCAGTTCT TCATCCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38422451	NES09812346	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29094799					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38422451	NES09812346	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105761315 () rs orientation: forward

Symbol	Name	Function Class
Rr2553	regulatory region 2553	115 bp distal