rs29094801 SNP Detail

Summary

• ID
  rs29094801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105760801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAATTAG AAACTGCCAT
  ATACAAGAAA TATTACAAAG TGAAAATACT TCTAAGAGCA CAGTAAGAAG AAAGAGGAAT
  GAAGAGGAAG AGAGATGAAG TTAAAAAAAG AAGAAGACAT GTTGGAGTAC TTTCTTCTTA
  GTTCTCAAAA CCTAGAGACT GTCAGCTGCA CACATGGAGG GGTCAGTTGA ACTCGTGAAC
  Y
  CCTGTTTTTC CTACAGTTTG TACTGGTATT GAGCCTACAT TAGGCAAGTA AGTGCCTCTT
  GTCTGCCAGA ACTTTCTTCT CTTTAGTAGC TGCACTTCCT TGTATACCAG GGACTTGTAC
  CAGGAGCCTC TACTGGTCAC ACTTAGCTTT GCAGTCTGTG AGTTGGTCTG GGTTTCTTAC
  TCTCATGAGA CTTTCCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38422453	NES09812344	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29094801					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38422453	NES09812344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105760801 () rs orientation: forward

Symbol	Name	Function Class
Rr2553	regulatory region 2553	within coordinates