rs29094974 SNP Detail

Summary

• ID
  rs29094974
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105248622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCTAAG GTTAAAGTTA
  GGATTATAAG TACCATTTTT TATATGTGTA ATATGCTATA TTTTTGTCAT TTTATTTTTC
  TTTATACCTT TTTTTCTTTG CTGGGCATGG TACACTTTGA TCCCAACACA AAGTTCAATA
  CTGACCAAGG CTACCAAGTG AGACCTGTCT AAAAACAGAA AAATAAAACA GTAATTTTCC
  M
  AGTTTTTTTA TGCTATTGAT TAATTCCAAC ACCCACTAAA AGTATGACCA TTACAGTATA
  TGTGAACACA TCAGATAGTT TGTTTTTAAA GTGTAGAAAT CTGCTGGAAT CCTTGGTGCC
  TCTGTCCCAC TTCTTGGCTG CCCTACATTG GACAGGTGTT GCAGGGGTTT TCACCTTGGA
  AACCCTTGAT TCCATTTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss38423426	NES09801708	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs29094974					SNP	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423426	NES09801708	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105248622 () rs orientation: forward

Symbol	Name	Function Class
Pgk1	phosphoglycerate kinase 1	1317 bp downstream
Taf9b	TATA-box binding protein associated factor 9B	1867 bp downstream