rs29095307 SNP Detail

Summary

• ID
  rs29095307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105148839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTACGTG ACTTCAACAC
  AGGTTTTATT TAAACAGGGT TGACCAGTGT TGCTTTTGTT CTGAACAACT CTACCTGTAA
  ATGAATAACC GAAGTCCATG TCTTTCTTCT AAAGGGCTAT AATAGAAGCA TCTCCCGAAC
  AGAAACCATA ATACGCTTTG CTTTCCAAGC CTCTATCACG GTTCTGTGTA TCGCATGTCC
  Y
  TGTTCACTGG GACTAGCCAC TCCAACTGCT GTGATGGTGG GCACAGGAGT AGGTGCTCAG
  AATGGCATAC TTATCAAAGG TGGGGAGCCA CTGGAAATGG CTCATAAGGT AAGAGTCCTC
  AGGACTAAAA ATTGCACTAT CAAACATGCA GTCACACCCT ATTGAGAAAT GGGGTTCGTA
  GTTTTTTTTG GCTGTGGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38423651	NES09804587	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29095307					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423651	NES09804587	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105148839 () rs orientation: forward

Symbol	Name	Function Class
Atp7a	ATPase, copper transporting, alpha polypeptide	within coordinates
Rr2535	regulatory region 2535	162 bp proximal
Rr8987	regulatory region 8987	within coordinates
Tssr161765	transcription start site region 161765	50 bp downstream