rs29095731 SNP Detail

Summary

• ID
  rs29095731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105147365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTG TGCTATTAGC TGTTTCTCGC
  Y
  GCACTCCTTC AATGGAGATG ACAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38423665	NES09804609	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C		C	T	C	C		C	T	C	C		T
ss46512591	mCV25149666	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss134261388	ENSMUSSNP3818137	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss325907940	CHEV_X_103299098	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29095731					SNP	C	C	T	C	T	C	T	C	T	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423665	NES09804609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105147365 () rs orientation: forward

Symbol	Name	Function Class
Atp7a	ATPase, copper transporting, alpha polypeptide	within coordinates
Rr2535	regulatory region 2535	1636 bp proximal
Rr8987	regulatory region 8987	1436 bp proximal
Tssr161765	transcription start site region 161765	1399 bp upstream