rs29096174 SNP Detail

Summary

• ID
  rs29096174
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105147252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAA TTCTCAGCTG TTTCTCCCTT
  S
  ATACTTGTTG AGAGTTGGCT TTCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38423668	NES09804606	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G	C	C	G	G		C	C	G	C		C
ss134261385	ENSMUSSNP3398668	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss325907939	CHEV_X_103298985	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29096174					SNP	G	G	C	C	G	C	C	G	G	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423668	NES09804606	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105147252 () rs orientation: forward

Symbol	Name	Function Class
Atp7a	ATPase, copper transporting, alpha polypeptide	within coordinates
Rr2535	regulatory region 2535	1749 bp proximal
Rr8987	regulatory region 8987	1549 bp proximal
Tssr161765	transcription start site region 161765	1512 bp upstream