rs29096401 SNP Detail

Summary

• ID
  rs29096401
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105648660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTCTCT GTTCCTGAGT
  GATGGGAAGA ACAGGCTTTC CATCAGCTCT GACAGGGCTT CACTTTCTAT TAGCTGCTCC
  AATCTTACTG TGTTTTCTGG AACTGACTGC ATTCCATTTC TCCTTTCCTT CTCTCGCCAT
  CCTTTCTTCT CCATCCAGTT TCGTTGCAGC TATCGCCTTA CATTTTCAGA AGATGTTAAC
  W
  GGGTAGACTG ACACCTCTCT ACTGTTACCT CCCTGCTTCC CTCTCCTCAC TTTCCTAGAT
  GCTTTTCAGT TCTGACATTT TAAAAAGTGT GGTAGAGAAG ATCAAGTAAG GAGAGCGCTG
  GAAAATGGGT CTTCACATAT ATATTAGATG ATGAATCTGT GTTAGTAAAA CACCACTAGG
  TAGAAAGTTA AGGGGTTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38422693	NES09812894	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29096401					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38422693	NES09812894	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105648660 () rs orientation: forward

Symbol	Name	Function Class
Cysltr1	cysteinyl leukotriene receptor 1	1375 bp upstream
Gm5127	predicted gene 5127	within coordinates
Rr395484	regulatory region 395484	1865 bp downstream
Tssr164032	transcription start site region 164032	1569 bp upstream
Tssr164033	transcription start site region 164033	1503 bp upstream
Tssr164034	transcription start site region 164034	1437 bp upstream
Tssr164035	transcription start site region 164035	1423 bp upstream
Tssr164036	transcription start site region 164036	1352 bp upstream
Tssr164037	transcription start site region 164037	1336 bp upstream