rs29096402 SNP Detail

Summary

• ID
  rs29096402
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105648159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAAGAAC ATTTAAAAGG
  GAAGCAAACA TTTGGATTCA AGAGCAGACT TTAATCCTAT CTTGGGAATT TTATTGCTAT
  TTTAGCCAGT ATTTATTCAA TGGAATTGAG TTTATAAGAG ATACAGAGTA TAAAGTTTTA
  CTTCCCCTCC AGTATGTGTT GTTTTCAAGG AGTTTGAGTT ATGGCAGAAG GGGTATTTTT
  W
  TTTAGATACT GAAGAAAAGT GCTTTAAGAT AGCACCACTT GGGGCTGGTG AGATGGCTCA
  GTGGGTAAGA GCACCCGACT GCTCTTCCAA AGGTCCAGAG TTCAAATCCC AGCAACCACA
  TGGTGGCTCA CAACCATCTG TAATGAGATC TGATGCCCTC TTCTGGTGTG TCTGAAGACA
  GCTACAGTGT ACTTACATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38422694	NES09812912	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29096402					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38422694	NES09812912	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105648159 () rs orientation: forward

Symbol	Name	Function Class
Cysltr1	cysteinyl leukotriene receptor 1	874 bp upstream
Gm5127	predicted gene 5127	within coordinates
Rr395484	regulatory region 395484	1364 bp downstream
Tssr164032	transcription start site region 164032	1068 bp upstream
Tssr164033	transcription start site region 164033	1002 bp upstream
Tssr164034	transcription start site region 164034	936 bp upstream
Tssr164035	transcription start site region 164035	922 bp upstream
Tssr164036	transcription start site region 164036	851 bp upstream
Tssr164037	transcription start site region 164037	835 bp upstream