rs29096491 SNP Detail

Summary

• ID
  rs29096491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:105253658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTCATA CACATTCATA
  CTCTATGGTC TATAGCTTAT AGGGATACAC CTTCAAAGTA CAGAGGGCAA TGGAAGATGA
  GAAAGTATCA TCAGAAATGA AGGCAGAGTA ATTTAAGATT TTTACAATGG GTATTATTCC
  CCAGGAACCT CTCTCTCACT CTGGGGAGAT TTTTCCTCAC CTTTCCTTAG TGGAAATATG
  Y
  TTCCTGTGTT TTAAAATAAA AAAGTAATTG ATGCCACAGG GAAGGAGGAT GCTAGGGGTG
  TGTGTGAGGC AGGGGGATGG TTGCATAAGG TGGGTGGGTG GGTGGGAGAA CCTTCTCAGA
  GGCAAAAGGG TGGATAGGGT GAAGAACTCT GGGAGGGGGG ACTGGAAAAG GGGGCAACAT
  TTGGAATGTA AATAATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss38423393	NES09801550	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs29096491					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423393	NES09801550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105253658 () rs orientation: forward

Symbol	Name	Function Class
Taf9b	TATA-box binding protein associated factor 9B	Intron
Tssr164020	transcription start site region 164020	1943 bp upstream