rs29096888 SNP Detail

Summary

• ID
  rs29096888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105252956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGAACCC AAGTCATAAA
  GCTTGGTGGC AAGTGCCCTT ACCCAAGAGC CATCTTGCTA CCCCAACTTT TATCTAAGTT
  GCTACTTTTA TGGAGATATG TTTCAAAAGA TCTGCAGTCT AAGCATACAT ATTAGGAAAC
  TGCTGTGTCA GCAGTCTATT GACATTAGTC CAATCACAGC TGCCACCTAT GATGTGAATA
  R
  AGGCACATTT TCATTCACAT TTACATTGGG ATCATACACG TTCATCACAT AACTATTCCA
  GTTCTTTTGA GATTTTACTC AACATGCTTT TCCCTGAAGA CATCTGTGAA CCCCAATTTC
  TTTATAGTAT TTTAGAATTT AATGAGCACC TCAATATACT ACCCTCGTCC TGAAATTTTA
  GGTGTATGTA AAACTTAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38423400	NES09801542	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29096888					SNP	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423400	NES09801542	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105252956 () rs orientation: forward

Symbol	Name	Function Class
Taf9b	TATA-box binding protein associated factor 9B	within coordinates
Tssr164020	transcription start site region 164020	1241 bp upstream