rs29096889 SNP Detail

Summary

• ID
  rs29096889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105252642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAATTGT GATATTTACT
  AGGCATAAGG ATGTTTGGAT ATATGTATAT ATAAATATTA AATCTTCCTA AACCTATTGC
  AAAATTAACA AAATTTTTAT TTTTAATTAC CTGAATTTTT AATTAGTATT CAGTGCATTG
  GATTCATGTG CAAGGCCAGG AGACATGCTT CTCTGATAGG GCATTTTCTA AAACAACTGC
  R
  TTTATAGATG TGTGTGCATG CTTGCGCGGG TGTGTATGTA CCATGGAACA CATATGGAGA
  GCGGGGGACA ACTTCTGGGA GTCGGTTCTC TTTATACCAT GGGGGTTCTG GGAAATTGAA
  CCCAAGTCAT AAAGCTTGGT GGCAAGTGCC CTTACCCAAG AGCCATCTTG CTACCCCAAC
  TTTTATCTAA GTTGCTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss38423401	NES09801632	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs29096889					SNP	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423401	NES09801632	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105252642 () rs orientation: forward

Symbol	Name	Function Class
Taf9b	TATA-box binding protein associated factor 9B	within coordinates
Tssr164020	transcription start site region 164020	927 bp upstream