rs29096891 SNP Detail

Summary

• ID
  rs29096891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105252583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACAAAG GTAATTATTA
  ACAGTAGAAT TCAATCTTTA AAAATTTTTA TCTTAAATTT GCCAATTGTG ATATTTACTA
  GGCATAAGGA TGTTTGGATA TATGTATATA TAAATATTAA ATCTTCCTAA ACCTATTGCA
  AAATTAACAA AATTTTTATT TTTAATTACC TGAATTTTTA ATTAGTATTC AGTGCATTGG
  R
  TTCATGTGCA AGGCCAGGAG ACATGCTTCT CTGATAGGGC ATTTTCTAAA ACAACTGCGT
  TTATAGATGT GTGTGCATGC TTGCGCGGGT GTGTATGTAC CATGGAACAC ATATGGAGAG
  CGGGGGACAA CTTCTGGGAG TCGGTTCTCT TTATACCATG GGGGTTCTGG GAAATTGAAC
  CCAAGTCATA AAGCTTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38423403	NES09801629	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29096891					SNP	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38423403	NES09801629	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105252583 () rs orientation: forward

Symbol	Name	Function Class
Taf9b	TATA-box binding protein associated factor 9B	within coordinates
Tssr164020	transcription start site region 164020	868 bp upstream