rs29096921 SNP Detail

Summary

• ID
  rs29096921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105645639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGGAAGT GAAAAAGGCT
  AACAGTAAAT CAGGAAGACT CTGACAGGGC TAGCTCAGCC TTACTCCAGC CTGTGACATT
  TTTTTGTTTT AATTGATCGG ATCATGGTCT AGATTATTTT TTGTAGGACT CGAATGCCCA
  ACATAATTAG GATTTTTCAG AGAACGAGGA GCAGTATTAT TAAAAGAGAT AGATGTAAAC
  R
  TAATATTTTG ATTATGTTTA TCTACTATGT AGACAGAGGT AAACTTTAGT CACAATTGGG
  GTACTAATTG TAAAATTATG ACAGGAAATA ATTTTTCAGT GACTTAAACT TGATGCCACA
  GATATGATAA ATTTAAAATT ATCTAGACAC AAATTTTATC TAAAATATAC TCTGGTAATA
  ATACTTTATA AATCTTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss38422703	NES09812903	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs29096921					SNP	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38422703	NES09812903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105645639 () rs orientation: forward

Symbol	Name	Function Class
Cysltr1	cysteinyl leukotriene receptor 1	within coordinates
Gm5127	predicted gene 5127	within coordinates
Rr395484	regulatory region 395484	89 bp upstream
Tssr164032	transcription start site region 164032	1423 bp downstream
Tssr164033	transcription start site region 164033	1505 bp downstream
Tssr164034	transcription start site region 164034	1567 bp downstream
Tssr164035	transcription start site region 164035	1587 bp downstream
Tssr164036	transcription start site region 164036	1644 bp downstream
Tssr164037	transcription start site region 164037	1676 bp downstream