rs29096923 SNP Detail

Summary

• ID
  rs29096923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105645501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTTAG GATTCCTCAT
  TATCAGCCCA CGGTACACCA AAGGCCAATT TATAATTTCC TGGGCCATAG AAGAATCATT
  CTTCTCTGAT AGAGTTTATA AATGCATCAG GTTTGATTCA AGTTAGGAGG GGACAGGTAA
  TGGGAAGTGA AAAAGGCTAA CAGTAAATCA GGAAGACTCT GACAGGGCTA GCTCAGCCTT
  R
  CTCCAGCCTG TGACATTTTT TTGTTTTAAT TGATCGGATC ATGGTCTAGA TTATTTTTTG
  TAGGACTCGA ATGCCCAACA TAATTAGGAT TTTTCAGAGA ACGAGGAGCA GTATTATTAA
  AAGAGATAGA TGTAAACATA ATATTTTGAT TATGTTTATC TACTATGTAG ACAGAGGTAA
  ACTTTAGTCA CAATTGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38422705	NES09812901	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29096923					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38422705	NES09812901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105645501 () rs orientation: forward

Symbol	Name	Function Class
Cysltr1	cysteinyl leukotriene receptor 1	within coordinates
Gm5127	predicted gene 5127	within coordinates
Rr395484	regulatory region 395484	227 bp upstream
Tssr164032	transcription start site region 164032	1561 bp downstream
Tssr164033	transcription start site region 164033	1643 bp downstream
Tssr164034	transcription start site region 164034	1705 bp downstream
Tssr164035	transcription start site region 164035	1725 bp downstream
Tssr164036	transcription start site region 164036	1782 bp downstream
Tssr164037	transcription start site region 164037	1814 bp downstream